Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18118306_18119986_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18118306 - 18119986

Intron Length:

1681

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTAAG

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTCCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTTAAT

U12 Branch Point Sequence:

GTTTCCTTAATG

Flanking Amino Acid:

HKNRYINILAYDHSRVKLRP

Intron Amino Acid Position:

863

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

34.8

Major BPS

74.6

0.61

1.1

75.5

35.1

Major PPT

82.9

0.74

0.8

77.3

31.5

Minor 5ss

37.5

-1.4

2.8

41.7

Minor BPS

83.1

0.9

1.2

80.32

35.6

Associated Gene:

Gene:

PTPRG

Ensembl Gene ID:

ENSAPLG00000012378

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012980

18104097 - 18498871

394775