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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18130184_18142304_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18130184 - 18142304
Intron Length:
12121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
CAACTCTGAATA
Flanking Amino Acid:
NESIPIIPIPDDMEAIPVKQ
Intron Amino Acid Position:
800

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.9
66.4
45.1
Major BPS
69.8
0.49
1
61
37.5
Major PPT
92.3
0.95
0.6
87.9
22.3
Minor 5ss
31.4
-2.1
3
39.3
45.9
Minor BPS
50.3
0.01
1.4
55.55
37

Associated Gene:

Gene:
PTPRG
Ensembl Gene ID:
ENSAPLG00000012378
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012980
18104097 - 18498871
394775