About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1815524_1819292_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1815524 - 1819292
Intron Length:
3769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGAACTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTATTTGAACT
Flanking Amino Acid:
LCQTISKSKFSRRWRRWNRF
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.2
90.9
28.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79
0.65
0.9
74.7
39.9
Minor 5ss
37.1
-1.5
2.8
51.6
44.9
Minor BPS
68.4
0.66
1.4
85.2
34.8

Associated Gene:

Gene:
CACNA1D
Ensembl Gene ID:
ENSAPLG00000013574
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014339
1737373 - 1928976
191604