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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18180509_18182516_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18180509 - 18182516
Intron Length:
2008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAACCA
5'SS Class:
major
3'SS Sequence:
TTTTTTTAAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
TFTKDSDKDLKAIISHVSPD
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
60.4
38.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.5
0.75
0.9
81.8
33.7
Minor 5ss
31.7
-2.1
3.1
37.1
41.2
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
PTPRG
Ensembl Gene ID:
ENSAPLG00000012378
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012980
18104097 - 18498871
394775