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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18182702_18196262_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18182702 - 18196262
Intron Length:
13561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATTAT
5'SS Class:
major
3'SS Sequence:
TCTTCTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTCATATATTT
Flanking Amino Acid:
ENPLGTEASKACSTPPVNMK
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
77.3
33.9
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
88.8
0.87
0.6
88.4
21.1
Minor 5ss
39.8
-1.1
3.3
57.3
47.4
Minor BPS
46.7
-0.1
2
71.33
39.7

Associated Gene:

Gene:
PTPRG
Ensembl Gene ID:
ENSAPLG00000012378
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012980
18104097 - 18498871
394775