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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18196456_18201213_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
18196456 - 18201213
Intron Length:
4758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGGCTGTGGTCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTTGCCATGATG
Flanking Amino Acid:
RKPVPISYHQLEAFYSIFTT
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
81.9
26.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
58.5
0.19
1.2
57.4
47.4
Minor 5ss
44.4
-0.6
2.7
57.6
47.1
Minor BPS
49.8
-0.1
1.8
59.01
43.4

Associated Gene:

Gene:
PTPRG
Ensembl Gene ID:
ENSAPLG00000012378
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012980
18104097 - 18498871
394775