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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18201372_18213311_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18201372 - 18213311
Intron Length:
11940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
GTAATTTTACTT
Flanking Amino Acid:
IHGLKGVVHHEKETFLDPFV
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
76.5
39.2
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
79.1
0.65
0.7
73.6
24.6
Minor 5ss
36.6
-1.5
2.7
46.7
41.7
Minor BPS
49.8
0.07
1.6
65.44
39.6

Associated Gene:

Gene:
PTPRG
Ensembl Gene ID:
ENSAPLG00000012378
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012980
18104097 - 18498871
394775