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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18410385_18498786_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18410385 - 18498786
Intron Length:
88402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
AGTTTCCTAACA
Flanking Amino Acid:
SVLHDVVCFPALTEGYVGSL
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
72.6
38.9
Major BPS
72
0.55
1
71.8
31.4
Major PPT
89
0.88
0.6
84.1
23.9
Minor 5ss
31.3
-2.1
3.3
40.9
45.3
Minor BPS
65.6
0.49
1.6
75.28
35.4

Associated Gene:

Gene:
PTPRG
Ensembl Gene ID:
ENSAPLG00000012378
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012980
18104097 - 18498871
394775