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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18510944_18549289_F

Intron Information:

Intron Rank:
131148
Intron Class:
major
Intron Phase:
Intron Coordinates:
18510944 - 18549289
Intron Length:
38346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTGCTTCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
85.2
32.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
100
1.12
0.4
100
0
Minor 5ss
37.2
-1.4
3.6
57.3
47.4
Minor BPS
49.7
-0
1.7
60.55
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020453
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039330
18510417 - 18551646
41230