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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18511132_18516580_F

Intron Information:

Intron Rank:
146798
Intron Class:
major
Intron Phase:
Intron Coordinates:
18511132 - 18516580
Intron Length:
5449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
CATTCTACTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTTATCACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
72.4
33.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
76.9
0.61
0.9
69.9
34.9
Minor 5ss
41.5
-0.9
3
58.2
40.5
Minor BPS
47.6
-0.1
2
71.31
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029080
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023685
18511079 - 18516976
5898