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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18516690_18516889_F

Intron Information:

Intron Rank:
146799
Intron Class:
major
Intron Phase:
Intron Coordinates:
18516690 - 18516889
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CGGTCTTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TAAATTTCAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
79.5
0.66
0.9
76.5
37.6
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
47.2
-0.2
1.6
54.66
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029080
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023685
18511079 - 18516976
5898