Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1853706_1855148_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1853706 - 1855148

Intron Length:

1443

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAAGCACT

5'SS Class:

major

3'SS Sequence:

TCTTTTCTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCATAT

U12 Branch Point Sequence:

TGGTTCATATCT

Flanking Amino Acid:

RPLRLVSGVPSLQVVLNSII

Intron Amino Acid Position:

252

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

1.1

69.4

41.2

Major BPS

74.2

0.6

69.3

38.4

Major PPT

89.3

0.88

0.6

88.9

20.3

Minor 5ss

44.2

-0.6

2.9

64.9

39.9

Minor BPS

52.4

0.15

1.9

73.27

43.4

Associated Gene:

Gene:

CACNA1D

Ensembl Gene ID:

ENSAPLG00000013574

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014339

1737373 - 1928976

191604