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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18548123_18551106_R

Intron Information:

Intron Rank:
136009
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
18548123 - 18551106
Intron Length:
2984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGAAGCTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ACTTACTAAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.8
91.6
26.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
58.5
0.19
1.1
52.4
46.2
Minor 5ss
38.2
-1.3
3.4
56.9
47.4
Minor BPS
48.2
-0.2
2
56
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020597
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040292
18547903 - 18557126
9224
ENSAPLT00000032129
18547903 - 18557718
9816