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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18551165_18557301_R

Intron Information:

Intron Rank:
136010
Intron Class:
major
Intron Phase:
Intron Coordinates:
18551165 - 18557301
Intron Length:
6137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTACTTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATATTATTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.4
30.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
69.7
0.44
1
63.2
42.8
Minor 5ss
23.1
-3.1
3.2
28
44
Minor BPS
59.7
0.17
1.6
63.57
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020597
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032129
18547903 - 18557718
9816