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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1855292_1859586_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1855292 - 1859586
Intron Length:
4295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATGACCTAACCT
Flanking Amino Acid:
NLLDFVIVVVGLFSVILEQL
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
81.4
32.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
80.5
0.69
0.8
73
37
Minor 5ss
35.6
-1.6
2.7
37.5
40.1
Minor BPS
49.9
0.08
2
70.84
45.9

Associated Gene:

Gene:
CACNA1D
Ensembl Gene ID:
ENSAPLG00000013574
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014339
1737373 - 1928976
191604