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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18557266_18626487_F

Intron Information:

Intron Rank:
146910
Intron Class:
major
Intron Phase:
Intron Coordinates:
18557266 - 18626487
Intron Length:
69222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
TCCTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TGTTTCCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.4
67.1
44.6
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
85.9
0.81
0.8
83.8
30.8
Minor 5ss
39.7
-1.2
3
49.2
40.2
Minor BPS
54.2
0.21
1.9
76.98
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029128
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030073
18557147 - 18653682
96536
ENSAPLT00000028326
18557147 - 18651395
94249
ENSAPLT00000036534
18557147 - 18638131
80985
ENSAPLT00000034834
18557147 - 18632040
74894