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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1859727_1924202_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1859727 - 1924202
Intron Length:
64476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTGTCTTTCATT
Flanking Amino Acid:
DDSNSTNHNLEKVEYAFLII
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
88.6
0.87
0.7
83.7
31.3
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
66.9
0.61
1.7
83.09
39.1

Associated Gene:

Gene:
CACNA1D
Ensembl Gene ID:
ENSAPLG00000013574
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014339
1737373 - 1928976
191604