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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18601026_18626487_F

Intron Information:

Intron Rank:
146908
Intron Class:
major
Intron Phase:
Intron Coordinates:
18601026 - 18626487
Intron Length:
25462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAACTTT
5'SS Class:
major
3'SS Sequence:
TCCTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TGTTTCCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
73.9
37.5
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
85.9
0.81
0.8
83.8
30.8
Minor 5ss
49.3
-0
3
69.9
42.9
Minor BPS
54.2
0.21
1.9
76.98
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029128
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043166
18600515 - 18632814
32300
ENSAPLT00000021170
18600515 - 18653682
53168