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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18626551_18631667_F

Intron Information:

Intron Rank:
146915
Intron Class:
major
Intron Phase:
Intron Coordinates:
18626551 - 18631667
Intron Length:
5117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTTACTTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
70.4
0.46
1
67.4
38.3
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
73.4
0.71
1.3
80.55
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029128
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034834
18557147 - 18632040
74894