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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18773404_18887432_F

Intron Information:

Intron Rank:
150381
Intron Class:
major
Intron Phase:
Intron Coordinates:
18773404 - 18887432
Intron Length:
114029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAGAT
U12 Branch Point Sequence:
ATAGCTTTAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
72.6
38.2
Major BPS
67.4
0.43
1.1
63.4
42.8
Major PPT
88.6
0.87
0.6
82
30
Minor 5ss
36.5
-1.5
2.9
48.4
41.7
Minor BPS
57.9
0.24
1.7
66.11
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030826
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020336
18773365 - 18887464
114100