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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18887500_18887942_F

Intron Information:

Intron Rank:
150386
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
18887500 - 18887942
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-TG
5'SS Sequence:
CTG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTTTTG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTTTCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
82.2
30.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
48.8
-0
3.2
84.8
30
Minor 5ss
38.8
-1.3
2.9
47.7
43.2
Minor BPS
54.8
0.23
1.9
79.65
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030826
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039261
18878521 - 18888230
9710