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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_18983399_18984369_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18983399 - 18984369
Intron Length:
971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTAAA
5'SS Class:
major
3'SS Sequence:
CCTTTGCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GTTCCTCTAACC
Flanking Amino Acid:
GATSLTISIQDGPEAGQTVK
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
77.1
32.8
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
82.3
0.73
0.8
75.6
33
Minor 5ss
37.5
-1.4
2.4
42.6
44.3
Minor BPS
62.4
0.37
1.7
73.68
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025191
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042956
18983253 - 18984626
1374