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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19036616_19114501_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19036616 - 19114501
Intron Length:
77886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
CCTTCCTTAAAG
Flanking Amino Acid:
FSRNDDVYKELQQHDKEDSP
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
73.2
34.8
Major BPS
54
0.1
1
59.7
32.6
Major PPT
74
0.54
1
74.3
28.3
Minor 5ss
30.5
-2.2
3.8
47.1
48.5
Minor BPS
70.4
0.5
1.5
68.4
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016636
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021088
19016539 - 19115179
98641