About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1924309_1926787_R

Intron Information:

Intron Rank:
2
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
1924309 - 1926787
Intron Length:
2479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CAGGATTTTCCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
GATTCCTTAACA
Flanking Amino Acid:
RRACISLVEWKPFDIFILLS
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.5
0.25
1.2
65.1
41.6
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
68.4
0.41
1
57.7
46.8
Minor 5ss
95.8
1.54
0.7
90.3
20.6
Minor BPS
86.4
1.14
1
85.96
32.3

Associated Gene:

Gene:
CACNA1D
Ensembl Gene ID:
ENSAPLG00000013574
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014339
1737373 - 1928976
191604