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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1927107_1928930_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1927107 - 1928930
Intron Length:
1824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GTTTCTCTCACA
Flanking Amino Acid:
QQQPPEQHPEEANYASSTRI
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
82.1
0.72
0.8
76.3
32.3
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
54.3
0.13
2.1
72.69
39.3

Associated Gene:

Gene:
CACNA1D
Ensembl Gene ID:
ENSAPLG00000013574
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014339
1737373 - 1928976
191604