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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_193398_204526_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
193398 - 204526
Intron Length:
11129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGTGC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGGTCTTCATGT
Flanking Amino Acid:
PGDEEEPKGARKKMNSESSA
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
61.2
40.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
89.8
0.9
0.6
89.2
19.6
Minor 5ss
32.1
-2
3.3
41.6
45.3
Minor BPS
46.2
-0.2
2
64.49
46

Associated Gene:

Gene:
ARHGEF3
Ensembl Gene ID:
ENSAPLG00000003091
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019189
193081 - 317844
124764