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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19371339_19371454_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19371339 - 19371454
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
ATTATATTAGGA
Flanking Amino Acid:
IFGNPSAIWKEYDKEIKGFV
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
88.3
0.86
0.7
84.9
29.9
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
44.9
-0.3
2
59.41
40.2

Associated Gene:

Gene:
C3orf67
Ensembl Gene ID:
ENSAPLG00000005403
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005576
19369124 - 19430289
61166