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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19373674_19382538_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19373674 - 19382538
Intron Length:
8865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGATGC
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAA
U12 Branch Point Sequence:
CAAAGATCCATT
Flanking Amino Acid:
PLGQDFSTELLITDLGNIKR
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
60.2
39.8
Major BPS
58.4
0.21
1.2
67
39.8
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
41.2
-1
3.1
60.7
43.8
Minor BPS
33.1
-1.2
2.1
44.08
40

Associated Gene:

Gene:
C3orf67
Ensembl Gene ID:
ENSAPLG00000005403
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005576
19369124 - 19430289
61166