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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19390462_19391849_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
19390462 - 19391849
Intron Length:
1388

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCTTAAATT
5'SS Class:
major
3'SS Sequence:
CATACAATATGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
AAACATACAATA
Flanking Amino Acid:
VSTRVSGEVRSVHRYLMCLD
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.3
0.27
1.3
66
45
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
45.6
-0.2
1.7
49.3
42.5
Minor 5ss
30.9
-2.2
4
49.3
46.6
Minor BPS
39.6
-0.7
1.7
44.16
30

Associated Gene:

Gene:
C3orf67
Ensembl Gene ID:
ENSAPLG00000005403
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005576
19369124 - 19430289
61166