About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19392053_19395513_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19392053 - 19395513
Intron Length:
3461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTTATTTTA
5'SS Class:
major
3'SS Sequence:
ATTTCCTGTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
ATTTCCTGTACA
Flanking Amino Acid:
EITSGMVLILSSRGKNKCDQ
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.3
71
34.9
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
78.7
0.65
0.9
73
36.8
Minor 5ss
42.6
-0.8
2.8
55.8
41.6
Minor BPS
66
0.5
1.8
78.9
36.6

Associated Gene:

Gene:
C3orf67
Ensembl Gene ID:
ENSAPLG00000005403
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005576
19369124 - 19430289
61166