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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19395951_19404715_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19395951 - 19404715
Intron Length:
8765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTCATA
Flanking Amino Acid:
NFQGTDSSEEEYEWKNFQTS
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
72.3
39.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.1
0.77
0.7
80.4
31.4
Minor 5ss
38.2
-1.3
3.1
50.1
46.5
Minor BPS
58.5
0.26
1.9
75.77
36

Associated Gene:

Gene:
C3orf67
Ensembl Gene ID:
ENSAPLG00000005403
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005576
19369124 - 19430289
61166