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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19404920_19409934_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19404920 - 19409934
Intron Length:
5015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCAATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTTTCAATA
Flanking Amino Acid:
TATWNSCFPPPVSQEHHYQK
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.6
0.76
0.8
82
28.5
Minor 5ss
40
-1.1
3
55.9
42.3
Minor BPS
68.8
0.59
1.4
78.75
31.7

Associated Gene:

Gene:
C3orf67
Ensembl Gene ID:
ENSAPLG00000005403
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005576
19369124 - 19430289
61166