About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19409997_19430144_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
19409997 - 19430144
Intron Length:
20148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
AAGTGAATGAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATTTTTCAAAG
Flanking Amino Acid:
EMSPLSHSNPRNLFLLFTLH
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
70.2
40.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
46.3
-0.2
1.2
38.9
42.2
Minor 5ss
37
-1.5
3.3
52.7
44
Minor BPS
54.1
-0
1.7
61.73
40.1

Associated Gene:

Gene:
C3orf67
Ensembl Gene ID:
ENSAPLG00000005403
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005576
19369124 - 19430289
61166