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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19449038_19449231_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19449038 - 19449231
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGCTG
5'SS Class:
major
3'SS Sequence:
TTGGTGTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
AGTGTCTGACCT
Flanking Amino Acid:
GRSISLRSWLGATGKPRSSQ
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.4
45.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
71.6
0.49
1
65.5
41
Minor 5ss
28.5
-2.5
3.3
30.2
42.9
Minor BPS
48.6
-0
1.8
67.48
43.2

Associated Gene:

Gene:
FAM3D
Ensembl Gene ID:
ENSAPLG00000005464
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005653
19448123 - 19452090
3968