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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19449256_19449737_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19449256 - 19449737
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TCCTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
CTGCCCACAGCT
Flanking Amino Acid:
WLGATGKPRSSQQLPQNKCG
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
82.5
0.73
0.7
76.6
25.4
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
44.4
-0.3
2
62.96
46.5

Associated Gene:

Gene:
FAM3D
Ensembl Gene ID:
ENSAPLG00000005464
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005653
19448123 - 19452090
3968