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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19449862_19450086_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19449862 - 19450086
Intron Length:
225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
CTTTCCTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
TGTCCCTGCACT
Flanking Amino Acid:
VGPSICFNDEVLMSNVKNNI
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.2
60
44.9
Major BPS
64.9
0.37
1
67
29.8
Major PPT
84
0.77
0.7
76.5
32
Minor 5ss
41.7
-0.9
2.9
53
44
Minor BPS
58
0.33
2
79.65
41.7

Associated Gene:

Gene:
FAM3D
Ensembl Gene ID:
ENSAPLG00000005464
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005653
19448123 - 19452090
3968