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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19472676_19475581_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19472676 - 19475581
Intron Length:
2906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTTTTTGATCC
Flanking Amino Acid:
LHRELLMNHKRGLGVESKPE
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.4
0.66
0.9
73.4
36.2
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
53.7
0.1
1.7
67.4
38.2

Associated Gene:

Gene:
FAM107A
Ensembl Gene ID:
ENSAPLG00000005707
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005891
19472506 - 19476754
4249