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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19475739_19476646_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19475739 - 19476646
Intron Length:
908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAACCA
5'SS Class:
major
3'SS Sequence:
CTCTTTATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCCTCTTTATTA
Flanking Amino Acid:
LLKRHQRLDQLEKEQEKEED
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
58.6
40.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85.4
0.8
0.8
80
30.5
Minor 5ss
30.2
-2.3
3.3
39.8
45.7
Minor BPS
60.5
0.33
1.6
66.17
41.5

Associated Gene:

Gene:
FAM107A
Ensembl Gene ID:
ENSAPLG00000005707
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005891
19472506 - 19476754
4249