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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19501244_19502430_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19501244 - 19502430
Intron Length:
1187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GCTTGATAAACT
Flanking Amino Acid:
MDNGDWGYMMTDPVTLNVG
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
86.6
0.82
0.7
80.5
31.5
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
47.3
-0.1
2.3
69.56
46.9

Associated Gene:

Gene:
KCTD6
Ensembl Gene ID:
ENSAPLG00000005871
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006069
19500557 - 19502457
1901