Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19506966_19507092_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19506966 - 19507092

Intron Length:

127

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAAGG

5'SS Class:

strong_major

3'SS Sequence:

TGTCGCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCGGGAC

U12 Branch Point Sequence:

CGCTCCGGCAGC

Flanking Amino Acid:

LRLSAAAAIQVTVRDALNQA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

68.8

42.1

Major BPS

36.6

-0.8

1.3

22.4

34.7

Major PPT

69.6

0.44

0.9

62.3

34.7

Minor 5ss

32.2

-2

40.4

45.3

Minor BPS

35.9

-1.1

2.5

43.01

44.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028332

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029748

19506825 - 19511420

4596