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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19507201_19507281_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19507201 - 19507281
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TGCTGCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TTTTGCTGCCCC
Flanking Amino Acid:
EVAQYDGAYKISRGLWKKYG
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
69.1
0.43
0.9
62
34.8
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
37.2
-0.9
3.7
66.78
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028332
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029748
19506825 - 19511420
4596