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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19507345_19507421_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19507345 - 19507421
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CCGTGCTTATTC
Flanking Amino Acid:
KRIIDTPISEMGFTGIAVGA
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
73.6
43
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
89.6
0.89
0.7
84.7
30.1
Minor 5ss
35.6
-1.6
3.7
55.9
48.3
Minor BPS
46.9
-0.2
2
53.05
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028332
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029748
19506825 - 19511420
4596