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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19513018_19519805_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19513018 - 19519805
Intron Length:
6788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
CTCAACTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
CTCTCCTCAACT
Flanking Amino Acid:
PSSPTPPSTAGASSIPPAPP
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.7
33.5
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
64.6
0.33
1
58.2
36.8
Minor 5ss
44.1
-0.6
2.8
56.9
47.3
Minor BPS
72.7
0.79
1.6
84.08
42.8

Associated Gene:

Gene:
PXK
Ensembl Gene ID:
ENSAPLG00000005874
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006144
19512812 - 19536781
23970