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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19519869_19520845_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19519869 - 19520845
Intron Length:
977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTACA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTATTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
AGTTACTAGACT
Flanking Amino Acid:
SAKYSNSNNSAGSGASSPLT
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
80.7
33.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
81.6
0.71
0.9
82
34.8
Minor 5ss
41.6
-0.9
2.5
52.6
44
Minor BPS
55.3
0.25
1.9
75.46
40.9

Associated Gene:

Gene:
PXK
Ensembl Gene ID:
ENSAPLG00000005874
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046909
19519711 - 19548423
28713
ENSAPLT00000041962
19519711 - 19548423
28713
ENSAPLT00000006144
19512812 - 19536781
23970