Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19521542_19521960_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19521542 - 19521960

Intron Length:

419

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAACTACT

5'SS Class:

major

3'SS Sequence:

CTTAATTTTGAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTCCCTTAATT

Flanking Amino Acid:

EKRLTEEQKLIHQHRRLTRA

Intron Amino Acid Position:

397

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

1.1

77.1

37.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

71.2

0.48

1.1

71.3

38.2

Minor 5ss

44.1

-0.6

2.6

58.3

40.2

Minor BPS

88.3

1.28

0.9

97.74

25.6

Associated Gene:

Gene:

PXK

Ensembl Gene ID:

ENSAPLG00000005874

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046909

19519711 - 19548423

28713

ENSAPLT00000041962

19519711 - 19548423

28713

ENSAPLT00000006144

19512812 - 19536781

23970

ENSAPLT00000048175

19512812 - 19548423

35612