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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19522678_19524822_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19522678 - 19524822
Intron Length:
2145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
CACCCACTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATAAT
U12 Branch Point Sequence:
TTTTTTGCACCC
Flanking Amino Acid:
MPTVSRLLQMPLFSDVLLTN
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.3
76.5
39.2
Major BPS
62.3
0.31
1.3
64.3
39.7
Major PPT
65.2
0.34
0.9
57
31.9
Minor 5ss
40.5
-1.1
3.4
62.8
42
Minor BPS
44.9
-0.4
2.3
65.33
41

Associated Gene:

Gene:
PXK
Ensembl Gene ID:
ENSAPLG00000005874
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046909
19519711 - 19548423
28713
ENSAPLT00000041962
19519711 - 19548423
28713
ENSAPLT00000006144
19512812 - 19536781
23970
ENSAPLT00000048175
19512812 - 19548423
35612