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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19525458_19526626_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19525458 - 19526626
Intron Length:
1169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTTTTTAATT
Flanking Amino Acid:
SYFSQFRKINTLESIDVHCF
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
84.3
27.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.3
0.82
0.7
80.5
24.8
Minor 5ss
47.2
-0.3
2.8
66.2
38.1
Minor BPS
80.4
1.03
0.9
89.47
28.1

Associated Gene:

Gene:
PXK
Ensembl Gene ID:
ENSAPLG00000005874
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046909
19519711 - 19548423
28713
ENSAPLT00000041962
19519711 - 19548423
28713
ENSAPLT00000006144
19512812 - 19536781
23970
ENSAPLT00000048175
19512812 - 19548423
35612