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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19526789_19527492_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19526789 - 19527492
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
CTGTCTTGGATT
Flanking Amino Acid:
IKTYGRQILEVLKFLHEKGF
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
57
0.3
1.5
70.82
41.1

Associated Gene:

Gene:
PXK
Ensembl Gene ID:
ENSAPLG00000005874
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046909
19519711 - 19548423
28713
ENSAPLT00000041962
19519711 - 19548423
28713
ENSAPLT00000006144
19512812 - 19536781
23970
ENSAPLT00000048175
19512812 - 19548423
35612