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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19529068_19529960_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19529068 - 19529960
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATATATA
5'SS Class:
major
3'SS Sequence:
TATTCATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CTTTTCCTATTC
Flanking Amino Acid:
QPKERLMLSWADLGPDKYLS
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
73
37.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
78.9
0.65
0.8
70.8
39.7
Minor 5ss
44.3
-0.6
2.7
50.5
46.1
Minor BPS
50
-0
1.9
66.11
40.2

Associated Gene:

Gene:
PXK
Ensembl Gene ID:
ENSAPLG00000005874
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046909
19519711 - 19548423
28713
ENSAPLT00000041962
19519711 - 19548423
28713
ENSAPLT00000006144
19512812 - 19536781
23970
ENSAPLT00000048175
19512812 - 19548423
35612