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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19530035_19530191_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19530035 - 19530191
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATTAAAC
Flanking Amino Acid:
WEVVEPLKDIGWRIRKKYFL
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88.4
0.86
0.6
84.9
22.7
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
62.3
0.36
1.9
78.51
36

Associated Gene:

Gene:
PXK
Ensembl Gene ID:
ENSAPLG00000005874
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046909
19519711 - 19548423
28713
ENSAPLT00000041962
19519711 - 19548423
28713
ENSAPLT00000006144
19512812 - 19536781
23970
ENSAPLT00000048175
19512812 - 19548423
35612